Publications of CoE CMS 2010


1. The direct approach to gravitation and electrostatics method for periodic systems,
Sergio Losilla, Dage Sundholm, and Jonas Juselius
J. Chem. Phys. 132 (2010) 024102; doi:10.1063/1.3291027

2. Calculation of absorption and emission spectra of [n]cycloparaphenylenes: the reason for the large Stokes shift
Dage Sundholm, Stefan Taubert, and Fabio Pichierri
Phys. Chem. Chem. Phys. 12 (2010) 2751-2757; DOI: 10.1039/b922175a

3. Role of non-hydrogen-bonded molecules in the oxygen K-edge spectrum of ice
T. Pylkkänen, V. M. Giordano, J.-C. Chervin, A. Sakko, M. Hakala, J. A. Soininen, K. Hämäläinen, G. Monaco, and S. Huotari
J. Phys. Chem. B 114 (2010) 3804-3808; DOI: 10.1021/jp912208v

4. Structure of liquid linear alcohols
J. Lehtola, M. Hakala, and K. Hämäläinen
J. Phys. Chem. B 114 (2010) 6426-6436; DOI: 10.1021/jp909894y

5. WAu12(CO)12?
M. P. Johansson and P. Pyykkö
Chem. Commun. 46 (2010) 3762-3764; DOI: 10.1039/c0cc00045k

6. Bonding Trends in Molecular Compounds of Lanthanides: The Double-Bonded Carbene Cations LnCH2+ (Ln=Sc, Y, La-Lu)
B. O. Roos and P. Pyykkö
Chem. Eur. J. 46 (2010) 3762-3764; DOI: 10.1002/chem.200902310

7. Theoretical study of H2 splitting and storage by boron-nitrogen-based systems: a bimolecular case and some qualitative aspects
P. Pyykkö and C. Wang
Phys. Chem. Chem. Phys. 12 (2010) 149-155; DOI: 10.1039/b917840f

8. Formulations of the closed-shell interactions in endohedral systems
C. Wang, M. Straka, and P. Pyykkö
Phys. Chem. Chem. Phys. 12 (2010) 6187-6203; DOI: 10.1039/b922808j

9. Interpretation of the photoluminescence spectrum of double quantum rings
Tommy Vänskä and Dage Sundholm
Phys. Rev. B 82 (2010) 085306(1-4); DOI: 10.1103/PhysRevB.82.085306

10. Aromatic Pathways in Twisted Hexaphyrins
Heike Fliegl, Dage Sundholm, Stefan Taubert, and Fabio Pichierri
J. Phys. Chem. A 114 (2010) 7153-7161; DOI: 10.1021/jp1021517

11. Chemical properties of the predicted 32-electron systems Pu@Sn12 and Pu@Pb12
Jean-Pierre Dognon, Carine Clavaguéra, and Pekka Pyykkö
Compt. Rend. Chimie 13 (2010) 884-888; DOI:10.1016/j.crci.2010.05.012

12. Magnetically Induced Currents in [n]Cycloparaphenylenes, n=6-11
Stefan Taubert, Dage Sundholm, and Fabio Pichierri,
J. Org. Chem. 75 (2010) 5867-5874; DOI: 10.1021/jo100902w

13. Ferrocene-like iron bis(dicarbollide), [3-FeIII-(1,2- C2B9H11)2]-. The First Experimental and Theoretical Refinement of a Paramagnetic 11B NMR Spectrum
Teemu O. Pennanen, Jan Machacek, Stefan Taubert, Juha Vaara, and Drahomir Hnyk,
Physical Chemistry Chemical Physics 12 (2010) 7018-7025; DOI: 10.1039/B923891C

14. Electron spin resonance parameters of bulk oxygen vacancy in semiconducting tin dioxide
Nergiz Özcan, Tommi Kortelainen, Vyacheslav Golovanov, Tapio T. Rantala, and Juha Vaara,
Physical Review B 81 (2010) 235202:1-10; DOI: 10.1103/PhysRevB. 81.235202

15. Understanding the NMR chemical shifts for 6-halopurines: Role of structure, solvent and relativistic effects
Stanislav Standara, Katerina Malinakova, Radek Marek, Jaromir Marek, Michal Hocek, and Juha Vaara,
Physical Chemistry Chemical Physics 12 (2010) 5126-5139; DOI: 10.1039/B921383J

16. Chemical distinction by nuclear spin optical rotation
Suvi Ikäläinen, Michael V. Romalis, Perttu Lantto, and Juha Vaara,
Physical Review Letters 105 (2010) 153001:1-4; DOI: 10.1103/ PhysRevLett.105.153001

17. Computational vibrational and electronic spectroscopy of the water nitric oxide complex
T. Salmi, N. Runeberg, L. Halonen, J. R. Lane, and H. G. Kjaergaard
J. Phys. Chem. A 114, 4835-4842 (2010); DOI: 10.1021/jp909441u

18. Variationally calculated vibrational energy levels of ammonia adsorbed on a Ni(111) surface
E. Sälli, V. Hänninen, and L. Halonen
J. Phys. Chem. C 114, 4550-4556 (2010); DOI: 10.1021/jp9105663

19. Continuous-wave optical parametric oscillator based on a Bragg grating
M. Vainio, M. Siltanen, T. Hieta, and L. Halonen
Opt. Lett. 35, 1527-1529 (2010); DOI: 10.1364/OL.35.001527

20. Pump-tunable continuous-wave singly resonant optical parametric oscillator from 2.5 to 4.4 micrometers
M. Siltanen, M. Vainio, and L. Halonen
Opt. Express 18, 14087-14092 (2010); DOI: 10.1364/OE.18.014087

21. Direct detection of acetylene in air by continuous wave cavity ring-down spectroscopy
F. M. Schmidt, O. Vaittinen, M. Metsälä, P. Kraus, and L. Halonen
Appl. Phys. B 101, 671-682 (2010); DOI: 10.1007/s00340-010-4027-5

22. A Be-W interatomic potential
C. Björkas, K.O.E. Henriksson, M. Probst, and K. Nordlund
J. Phys. Cond. Matter 22, 352206 (2010); DOI: 10.1088/0953-8984/22/35/352206

23. Acetylene in breath: background levels and real-time eliminations kinetics after smoking
M. Metsälä, F. M. Schmidt, M. Skyttä, O. Vaittinen, and L. Halonen
J. Breath Res. 4 046003/1-046003/8 (2010); DOI: 10.1088/1752-7155/4/4/046003

24. WAu12(CO)12?
M. P. Johansson and P. Pyykko
Chem. Commun. 46, 3762-3764 (2010); DOI: 10.1039/C0CC00045K

25. Formulations of the closed-shell interactions in endohedral systems
C. Wang, M. Straka and P. Pyykko
Phys. Chem. Chem. Phys. 12, 6187-6203 (2010); DOI: 10.1039/B922808J

26. Theoretical study of H2 splitting and storage by boron-nitrogen-based systems: a bimolecular case and some qualitative aspects
P. Pyykko and C. Wang
Phys. Chem. Chem. Phys. 12, 149-155 (2010); DOI: 10.1039/B917840F

27. Bonding Trends in Molecular Compounds of Lanthanides: The Double-Bonded Carbene Cations LnCH2+ (Ln=Sc, Y, La-Lu)
B. Roos and P. Pyykko
Chem. Eur. J. 16, 1521-3765 (2010); DOI: 10.1002/chem.200902310

28. Magnetizabilities at Self-Interaction-Corrected Density Functional Theory Level
M. P. Johansson and M. Swart
J. Chem. Theory Comput. 6, 3302-3311 (2010); DOI: 10.1021/ct100235b

29. Polymer Conformations in Internal (Polyspherical) Coordinates Theory Level
J. Pesonen and K.O.E Henriksson
J. Comput Chem. 31, 1873-1881 (2010); DOI: 10.1002/jcc.21474

30. Polymer Dynamics in Torsion Space
K.O.E. Henriksson and J. Pesonen
J. Comput Chem. 31, 1882-1888 (2010); DOI: 10.1002/jcc.21475

31. Formic and acetic acids in a nitrogen matrix: Enhanced stability of the higher energy conformer
S. Lopes, A. Domanskaya, R. Fausto, M. Räsänen, and L. Khriachtchev
J. Chem. Phys. 133, 144507 (2010); DOI: 10.1063/1.3484943

32. The other conformer of peroxyformic acid
A. Domanskaya, A. Ermilov, N. Andrijchenko, and L. Khriachtchev
Mol. Phys. 108, 2369-2375 (2010); DOI: 10.1080/00268976.2010.496375

33. Interaction of formic acid with nitrogen: Stabilization of the higher-energy conformer
K. Marushkevich, M. Räsänen, and L. Khriachtchev
J. Phys. Chem. A 114, 10584-10589. (2010); DOI: 10.1021/jp105044r

34. HY...N2 and HXeY...N2 complexes in solid xenon (Y = Cl and Br): Unexpected suppression of the complex formation for deposition at higher temperature
L. Khriachtchev, S. Tapio, M. Räsänen, A. Domanskaya, and A. Lignell
J. Chem. Phys. 133, 084309 (2010); DOI: 10.1063/1.3472976

35. Infrared spectrum of elusive C2F radical: A matrix-isolation and computational study
R. Tarroni, L. Khriachtchev, A. Domanskaya, M. Räsänen, E. Misochko, and A. Akimov
Chem. Phys. Lett. 493, 220-224 (2010); DOI: 10.1016/j.cplett.2010.05.027

36. Local formation of HArF in solid argon: Low-temperature limit and thermal activation
H. Lignell, L. Khriachtchev, A. Lignell, and M. Räsänen
Fizika Nizkih Temperatur 36, 504-511 (2010); Low Temp. Phys. 36, 400-406 (2010); DOI: 10.1063/1.3432248

37. Vibrational spectroscopy of trans and cis deuterated formic acid (HCOOD): Anharmonic calculations and experiments in argon and neon matrices
K. Marushkevich, L. Khriachtchev, J. Lundell, A. Domanskaya, M. Räsänen
J. Mol. Spec. 259, 105-110 (2010); DOI: 10.1016/j.jms.2009.12.001

38. Matrix-isolation and ab initio study of trans-trans and trans-cis dimers of formic acid
K. Marushkevich, L. Khriachtchev, J. Lundell, A. Domanskaya, M. Räsänen
J. Phys. Chem. A 114, 3495-3502 (2010); DOI: 10.1021/jp911515f

39. Matrix-isolation and ab initio study of HNgCCF and HCCNgF molecules (Ng = Ar, Kr, and Xe)
L. Khriachtchev, A. Domanskaya, J. Lundell, A. Akimov, M. Räsänen, and E. Misochko
J. Phys. Chem. A 114, 4181-4187 (2010); DOI: 10.1021/jp1001622

40. Analysis of size distribution of single-walled carbon nanotubes using optical absorption spectroscopy
Y. Tian, H. Jiang, J. Pfaler, Z. Zhen, A. Nasibulin, T. Nikitin, B. Aitchison, L. Khriachtchev, D. Brown, E. Kauppinen
J. Phys. Chem. Lett. 1, 1143-1148 (2010); DOI: 10.1021/jz100161p

41. Ion irradiation of multi-walled boron nitride nanotubes
O. Lehtinen, T. Nikitin, A. V. Krasheninnikov, L. Sun, L. Khriachtchev, F. Banhart, T. Terao, D. Goldberg, and J. Keinonen
Phys. Status Sol. C 7, 1256-1259 (2010); DOI: 10.1002/pssc.200982956

42. Time-dependent density functional approach for the calculation of inelastic x-ray scattering spectra of molecules
Arto Sakko and Angel Rubio and Mikko Hakala, and Keijo Hämäläinen,
J. Chem. Phys. 133 (2010) 174111; DOI: 10.1063/1.3503594

43. Amorphous defect clusters of pure Si and type inversion in Si detectors
Eero Holmström, Kai Nordlund, and Mikko Hakala,
Phys. Rev. B 82 (2010) 104111; DOI: 10.1103/PhysRevB.82.104111

44. Anomalous Energetics in Tetrahydrofuran Clathrate Hydrate Revealed by X-ray Compton Scattering
Felix Lehmkühler, Arto Sakko, Christian Sternemann, Mikko Hakala, Kim Nygård, Christoph J. Sahle, Szabolcs Galambosi, Ingo Steinke, Sebastian Tiemeyer, Alexander Nyrow, Thomas Buslaps, Diego Pontoni, Metin Tolan, and Keijo Hämäläinen
J. Phys. Chem. Lett. 1 (2010) 2832-2836; DOI: 10.1021/jz1010362

45. Universal Signature of Hydrogen Bonding in the Oxygen K-Edge Spectrum of Alcohols
T. Pylkkänen, J. Lehtola, M. Hakala, A. Sakko, G. Monaco, S. Huotari, and K. Hämäläinen
J. Phys. Chem. B 114 (2010) 13076-13083; DOI: 10.1021/jp106479a

46. Carbon and proton shielding tensors in methyl halides
Anu M. Kantola, Perttu Lantto, Juha Vaara, and Jukka Jokisaari
Phys. Chem. Chem. Phys. 12 (2010) 2679-2692; DOI: 10.1039/B923506J

47. Inter-heme electron tunneling in cytochrome c oxidase
Ville R. I. Kaila, Mikael P. Johansson, Dage Sundholm, and Mårten Wikström
Proc. Natl. Acad. Sci. (USA) 107 (2010) 21470-21475; DOI:10.1073/pnas.1005889107

48. Effect of iron nanoparticle geometry on the energetics of carbon interstititals,
A. Tolvanen, A. Krasheninnikov, A. Kuronen, and K. Nordlund
Physica Status Solidi (C), 1278 (2010) 1274-1278;doi:10.1002/pssc.200982959

49. Migration and Localization of Metal Atoms on Strained Graphene,
O. Cretu, A. Krasheninnikov, J. Rodriguez-Manzo, L. Sun, R. Nieminen, and F. Banhart
Physical Review Letters, 105 (2010) 196102;doi:10.1103/PhysRevLett.105.196102

50. Defect-induced junctions between single- or double-wall carbon nanotubes and metal crystals,
J. Rodriguez-Manzo, A. Tolvanen, A. Krasheninnikov, K. Nordlund, A. Demortiere, and F. Banhart
Nanoscale, 2 (2010) 901;doi:10.1039/c0nr00098a

51. Boron nitride formation on magnesium studied by ab initio calculations,
S. Riikonen, A. Foster, A. Krasheninnikov, and R. Nieminen
Physical Review B, 81 (2010) 125442;doi:10.1103/PhysRevB.81.125442

52. Ion irradiation of multi-walled boron nitride nanotubes,
O. Lehtinen, T. Nikitin, A. Krasheninnikov, L. Sun, L. Khriachtchev, F. Banhart, T. Terao, D. Golberg, and J. Keinonen
Physica Status Solidi (C), 1259 (2010) 1256-1259;doi:10.1002/pssc.200982956

53. Migration of gold atoms in graphene ribbons: Role of the edges,
W. Zhang, L. Sun, Z. Xu, A. Krasheninnikov, P. Huai, Z. Zhu, and F. Banhart
Physical Review B, 81 (2010) 125425;doi:10.1103/PhysRevB.81.125425

54. Submonolayers of carbon on α-Fe facets: An ab initio study,
S. Riikonen, A. Krasheninnikov, R. Nieminen
Physical Review B, 82 (2010) 125459;doi:10.1103/PhysRevB.82.125459

55. Electron knock-on damage in hexagonal boron nitride monolayers,
J. Kotakoski, C. Jin, O. Lehtinen, K. Suenaga, and A. Krasheninnikov
Physical Review B, 82 (2010) 113404;doi:10.1103/PhysRevB.82.113404

56. Effects of ion bombardment on a two-dimensional target: Atomistic simulations of graphene irradiation,
O. Lehtinen, J. Kotakoski, A. Krasheninnikov, A. Tolvanen, K. Nordlund, and J. Keinonen
Physical Review B, 81 (2010) 153401;doi:10.1103/PhysRevB.81.153401

57. Ion and electron irradiation-induced effects in nanostructured materials,
A. Krasheninnikov and K. Nordlund
Journal of Applied Physics, 107 (2010) 071301;doi:10.1063/1.3318261

58. Response of mechanically strained nanomaterials to irradiation: Insight from atomistic simulations,
E. Holmström, L. Toikka, A. Krasheninnikov, and K. Nordlund
Physical Review B, 82 (2010) 045420;doi:10.1103/PhysRevB.82.045420

59. A first-principles study on magnetic coupling between carbon adatoms on graphene,
I. Gerber, A. Krasheninnikov, A. Foster, and R. Nieminen
New Journal of Physics, 12 (2010) 113021;doi:10.1088/1367-2630/12/11/113021

60. Continuous-wave laser annealing of Si-rich oxide: A microscopic picture of macroscopic Si SiO2 phase separation,
L. Khriachtchev, T. Nikitin, M. Räsänen, A. Domanskaya, S. Boninelli, F. Iacona, A. Engdahl, J. Juhanoja, and S. Novikov
J. Appl. Phys. 108, 124301 (2010); doi:10.1063/1.3520673

61. How Far Can We Go? Quantum-Chemical Investigations of Oxidation State plus IX,
D. Himmel, C. Knapp, M. Patzschke, and S. Riedel
CHEMPHYSCHEM. 11, 865-869 (2010); doi:10.1002/cphc.200900910

62. Threshold defect production in germanium determined by density functional theory molecular dynamics simulations,
E. Holmström, K. Nordlund, and A. Kuronen
Physica Scripta 81, 035601 (2010)

63. Classical molecular dynamics simulations of hypervelocity nanoparticle impacts on amorphous silica,
J. Samela and K. Nordlund
Phys. Rev. B 81, 054108 (2010)

64. The effect of plasma impurities on the sputtering of tungsten carbide,
K. Vörtler, C. Björkas, and K. Nordlund
23, 085002 (2010), j. Phys.: Conden. Matter.

65. Growing multiple layers of porous semiconductors - a molecular dynamics study,
A. Harjunmaa and K. Nordlund
EPL 91, 26002 (2010)

66. Contribution of Electronic Energy Deposition to the Atomic Cascade Damage in Nanocrystals, in Materials for Nuclear Applications and Extreme Environments,
M. Backman, F. Djurabekova, O. H. Pakarinen, K. Nordlund, and M. Toulemonde
MRS Symposium Proceedings, edited by R. Devanthan, C. Trautmann, A. Misra, and B. Wirth (MRS, Warrendale, PA, RSA, 2010)

67. Stopping of energetic argon cluster ions in graphite: role of cluster momentum and charge,
V. N. Popok, K. Samela, K. Nordlund, and E. E. B. Campbell
Phys. Rev. B 82, 201403 (2010)

68. Hydrogen interaction with point defects in tungsten,
K. Heinola, T. Ahlgren, K. Nordlund, and J. Keinonen
Phys. Rev. B 82, 094102 (2010)

69. Optimization of large amorphous silicon and silica structures for molecular dynamics simulations of energetic impacts,
J. Samela, S. A. Norris, K. Nordlund, and M. J. Aziz
Nucl. Instr. Meth. Phys. Res. B (2010)

70. Crater formation by single ions, cluster ions and ion "showers",
F. Djurabekova, J. Samela, H. Timko, K. Nordlund, S. Calatroni, M. Taborelli, and W. Wuensch
Nucl. Instr. Meth. Phys. Res. B (2010), IBMM 2010 conference paper

71. Sputtering of freestanding metal nanocrystals,
T. T. Järvi and K. Nordlund
Nucl. Instr. Meth. Phys. Res. B (2010), IBMM 2010 conference paper

72. Defects in Carbon implanted Silicon calculated by classical potentials and first principles methods,
F. Zirkelbach, B. Stritzker, K. Nordlund, J. K. N. Lindner, W. G. Schmidt, and E. Rauls
Phys. Rev. B 82, 094110 (2010)

73. Breakdown Studies for the CLIC Accelerating Structures,
S. Calatroni, A. Descoeudres, A. Hansen, J. W. Kovermann, M. Taborelli, H. Timko, W. Wuensch, F. Djurabekova, K. Nordlund, A. Pohjonen, and A. Kuronen
Proceedings of the 2010 LINAC conference (2010)